From 64a63d179b31b78ee8455da0f4d5b98c98d7cf19 Mon Sep 17 00:00:00 2001
From: "J.-S. Caux" <J.S.Caux@uva.nl>
Date: Thu, 8 Aug 2019 09:06:45 +0200
Subject: [PATCH] Add management command to correct issue path
---
.../management/commands/repair_issue_path.py | 97 +++++++++++++++++++
1 file changed, 97 insertions(+)
create mode 100644 journals/management/commands/repair_issue_path.py
diff --git a/journals/management/commands/repair_issue_path.py b/journals/management/commands/repair_issue_path.py
new file mode 100644
index 000000000..35af0c151
--- /dev/null
+++ b/journals/management/commands/repair_issue_path.py
@@ -0,0 +1,97 @@
+__copyright__ = "Copyright © Stichting SciPost (SciPost Foundation)"
+__license__ = "AGPL v3"
+
+
+import os
+
+from django.conf import settings
+from django.core.management.base import BaseCommand
+
+from journals.models import Issue
+
+
+class Command(BaseCommand):
+ """
+ Verify path of issue publications and deposits; if wrong, repair.
+
+ This command was written to repair the incorrect folder structure of SciPostPhys
+ volume 5 issue 6, volume 6 issues 1, 2 and 3 (2019-08-08).
+ """
+
+ help = 'Repairs the paths of an issue, including its publications and deposits'
+
+ def add_arguments(self, parser):
+ parser.add_argument(
+ '--issue_doi_label', choices=[issue.doi_label for issue in Issue.objects.all()],
+ action='store', dest='issue_doi_label',
+ help='doi label of the issue to repair'
+ )
+
+ def handle(self, *args, **kwargs):
+ issue = Issue.objects.get(doi_label=kwargs['issue_doi_label'])
+ print('media root: %s' % settings.MEDIA_ROOT)
+ print('issue path: %s' % issue.path)
+ if ('/%s/%s' % (issue.in_volume.number, issue.number)) not in issue.path:
+ print('WARNING: /%s/%s not in issue path %s' % (
+ issue.in_volume.number, issue.number, issue.path))
+ # repair the issue path
+ old_issue_path = issue.path
+ issue_path = 'SCIPOST_JOURNALS/{name}/{volnr}/{issuenr}'.format(
+ name=issue.in_volume.in_journal.name,
+ volnr=issue.in_volume.number,
+ issuenr=issue.number)
+ issue.path = issue_path
+ issue.save()
+ print('New issue path: %s' % issue.path)
+ for pub in issue.publications.all():
+ print('\t%s' % pub.doi_label)
+ old_dir = old_issue_path + '/{paper_nr}'.format(paper_nr=pub.get_paper_nr())
+ new_dir = issue_path + '/{paper_nr}'.format(paper_nr=pub.get_paper_nr())
+ os.makedirs(settings.MEDIA_ROOT + new_dir, exist_ok=True)
+ new_pub_path = new_dir + '/{doi}.pdf'.format(doi=pub.doi_label.replace('.', '_'))
+ os.rename(pub.pdf_file.path, settings.MEDIA_ROOT + new_pub_path)
+ pub.pdf_file.name = new_pub_path
+ pub.save()
+ print('\t%s' % pub.pdf_file.path)
+ # Move the timestamped files
+ for deposit in pub.deposit_set.all():
+ new_dep_path = new_dir + '/{doi}_Crossref_{timestamp}.xml'.format(
+ doi=pub.doi_label.replace('.', '_'),
+ timestamp=deposit.timestamp)
+ os.rename(deposit.metadata_xml_file.path, settings.MEDIA_ROOT + new_dep_path)
+ deposit.metadata_xml_file.name = new_dep_path
+ deposit.save()
+ print('\t\t%s' % deposit.metadata_xml_file.path)
+ # Now move the latest (non-timestamped) one
+ old_dep_path = old_dir + '/{doi}_Crossref.xml'.format(
+ paper_nr=pub.get_paper_nr(),
+ doi=pub.doi_label.replace('.', '_'))
+ new_dep_path = new_dir + '/{doi}_Crossref.xml'.format(
+ paper_nr=pub.get_paper_nr(),
+ doi=pub.doi_label.replace('.', '_'))
+ os.rename(settings.MEDIA_ROOT + old_dep_path, settings.MEDIA_ROOT + new_dep_path)
+
+ for deposit in pub.doajdeposit_set.all():
+ new_dep_path = new_dir + '/{doi}_DOAJ_{timestamp}.json'.format(
+ doi=pub.doi_label.replace('.', '_'),
+ timestamp=deposit.timestamp)
+ os.rename(deposit.metadata_DOAJ_file.path, settings.MEDIA_ROOT + new_dep_path)
+ deposit.metadata_DOAJ_file.name = new_dep_path
+ deposit.save()
+ print('\t\t%s' % deposit.metadata_DOAJ_file.path)
+ old_dep_path = old_dir + '/{doi}_DOAJ.json'.format(
+ paper_nr=pub.get_paper_nr(),
+ doi=pub.doi_label.replace('.', '_'))
+ new_dep_path = new_dir + '/{doi}_DOAJ.json'.format(
+ paper_nr=pub.get_paper_nr(),
+ doi=pub.doi_label.replace('.', '_'))
+ os.rename(settings.MEDIA_ROOT + old_dep_path, settings.MEDIA_ROOT + new_dep_path)
+
+ # Remove unneeded directories
+ os.rmdir(settings.MEDIA_ROOT + old_dir + '/{doi}_Crossref'.format(
+ paper_nr=pub.get_paper_nr(),
+ doi=pub.doi_label.replace('.', '_')))
+ os.rmdir(settings.MEDIA_ROOT + old_dir + '/{doi}_DOAJ'.format(
+ paper_nr=pub.get_paper_nr(),
+ doi=pub.doi_label.replace('.', '_')))
+ os.rmdir(settings.MEDIA_ROOT + old_dir)
--
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