SciPost Code Repository

Skip to content
Snippets Groups Projects
managers.py 18.8 KiB
Newer Older
__copyright__ = "Copyright © Stichting SciPost (SciPost Foundation)"
import datetime

from django.conf import settings
from django.db import models
from django.db.models import Q
from django.utils import timezone
Jorran de Wit's avatar
Jorran de Wit committed
from . import constants
class SubmissionQuerySet(models.QuerySet):
    def _newest_version_only(self, queryset):
        """
Jorran de Wit's avatar
Jorran de Wit committed
        TODO: Make more efficient... with agregation or whatever.

        The current Queryset should return only the latest version
        of the Arxiv submissions known to SciPost.

        Method only compatible with PostGresQL
        """
        # This method used a double query, which is a consequence of the complex distinct()
        # filter combined with the PostGresQL engine. Without the double query, ordering
        # on a specific field after filtering seems impossible.
Jorran de Wit's avatar
Jorran de Wit committed
               .order_by('preprint__identifier_wo_vn_nr', '-preprint__vn_nr')
               .distinct('preprint__identifier_wo_vn_nr')
               .values_list('id', flat=True))
        return queryset.filter(id__in=ids)

    def user_filter(self, user):
Jorran de Wit's avatar
Jorran de Wit committed
        """Filter on basic conflict of interests.

        Prevent conflict of interest by filtering submissions possibly related to user.
        This filter should be inherited by other filters.
        """
Jorran de Wit's avatar
Jorran de Wit committed
        try:
            return (self.exclude(authors=user.contributor)
                    .exclude(Q(author_list__icontains=user.last_name),
                             ~Q(authors_false_claims=user.contributor)))
        except AttributeError:
            return self.none()
Jorran de Wit's avatar
Jorran de Wit committed
    def _pool(self, user):
Jorran de Wit's avatar
Jorran de Wit committed
        """Return the user-dependent pool of Submissions.

        This filter creates 'the complete pool' for a user. This new-style pool does
        explicitly not have the author filter anymore, but registered pools for every Submission.
        !!!  IMPORTANT SECURITY NOTICE  !!!
        All permissions regarding Editorial College actions are implicitly taken care
        of in this filter method! ALWAYS use this filter method in your Editorial College
        related view/action.
Jorran de Wit's avatar
Jorran de Wit committed
        """
        if not hasattr(user, 'contributor'):
            return self.none()

        if user.has_perm('scipost.can_oversee_refereeing'):
            # Editorial Administators do have permission to see all submissions
            # without being one of the College Fellows. Therefore, use the 'old' author
            # filter to still filter out their conflicts of interests.
            return self.user_filter(user)
        else:
            qs = user.contributor.fellowships.active()
            return self.filter(fellows__in=qs)

    def pool(self, user):
Jorran de Wit's avatar
Jorran de Wit committed
        """Return the user-dependent pool of Submissions in active referee phase."""
Jorran de Wit's avatar
Jorran de Wit committed
        return self.pool_editable(user).filter(is_current=True, status__in=[
Jorran de Wit's avatar
Jorran de Wit committed
            constants.STATUS_UNASSIGNED,
            constants.STATUS_EIC_ASSIGNED,
Jorran de Wit's avatar
Jorran de Wit committed
            constants.STATUS_ACCEPTED])
    def pool_editable(self, user):
        """Return the editable pool for a certain user.
Jorran de Wit's avatar
Jorran de Wit committed
        This is similar to the regular pool, however it also contains submissions that are
        hidden in the regular pool, but should still be able to be opened by for example
        the Editor-in-charge.
        """
Jorran de Wit's avatar
Jorran de Wit committed
        return self._pool(user)
    def filter_for_eic(self, user):
Jorran de Wit's avatar
Jorran de Wit committed
        """Return the set of Submissions the user is Editor-in-charge for.

        If user is an Editorial Administrator: return the full pool.
        qs = self._pool(user)
Jorran de Wit's avatar
Jorran de Wit committed
        if not user.has_perm('scipost.can_oversee_refereeing'):
            qs = qs.filter(editor_in_charge__user=user)
    def filter_for_author(self, user):
Jorran de Wit's avatar
Jorran de Wit committed
        """Return the set of Submissions for which the user is a registered author."""
        if not hasattr(user, 'contributor'):
            return self.none()
        return self.filter(authors=user.contributor)

    def prescreening(self):
Jorran de Wit's avatar
Jorran de Wit committed
        """Return submissions just coming in and going through pre-screening."""
Jorran de Wit's avatar
Jorran de Wit committed
        return self.filter(status=constants.STATUS_INCOMING)

Jorran de Wit's avatar
Jorran de Wit committed
    def assigned(self):
        """Return submissions with assigned Editor-in-charge."""
        return self.filter(editor_in_charge__isnull=False)

Jorran de Wit's avatar
Jorran de Wit committed
    def unassigned(self):
        """Return submissions passed pre-screening, but unassigned."""
Jorran de Wit's avatar
Jorran de Wit committed
        return self.filter(status=constants.STATUS_UNASSIGNED)
    def without_eic(self):
        """Return Submissions that still need Editorial Assignment."""
        return self.filter(status__in=[constants.STATUS_INCOMING, constants.STATUS_UNASSIGNED])

    def actively_refereeing(self):
Jorran de Wit's avatar
Jorran de Wit committed
        """Return submission currently in some point of the refereeing round."""
Jorran de Wit's avatar
Jorran de Wit committed
        return self.filter(status=constants.STATUS_EIC_ASSIGNED).exclude(
            eicrecommendations__status=constants.DECISION_FIXED)
    def public(self):
Jorran de Wit's avatar
Jorran de Wit committed
        """Return all publicly available Submissions."""
        return self.filter(visible_public=True)
Jorran de Wit's avatar
Jorran de Wit committed

Jorran de Wit's avatar
Jorran de Wit committed
    def public_listed(self):
        """List all public Submissions if not published and submitted.
Jorran de Wit's avatar
Jorran de Wit committed

        Implement: Use this filter to also determine, using a optional user argument,
                   if the query should be filtered or not as a logged in EdCol Admin
                   should be able to view *all* submissions.
        """
Jorran de Wit's avatar
Jorran de Wit committed
        return self.filter(visible_public=True).exclude(status__in=[
Jorran de Wit's avatar
Jorran de Wit committed
            constants.STATUS_RESUBMITTED,
Jorran de Wit's avatar
Jorran de Wit committed
            constants.STATUS_PUBLISHED])
Jorran de Wit's avatar
Jorran de Wit committed
    def public_newest(self):
Jorran de Wit's avatar
Jorran de Wit committed
        This query contains set of public() submissions, filtered to only the newest available
        version.
Jorran de Wit's avatar
Jorran de Wit committed
        return self._newest_version_only(self.public())
Jorran de Wit's avatar
Jorran de Wit committed
    def treated(self):
Jorran de Wit's avatar
Jorran de Wit committed
        """This query returns all Submissions that are presumed to be 'done'."""
        return self.filter(status__in=[
            constants.STATUS_ACCEPTED,
            constants.STATUS_REJECTED,
            constants.STATUS_PUBLISHED,
            constants.STATUS_RESUBMITTED])
Jorran de Wit's avatar
Jorran de Wit committed

    def originally_submitted(self, from_date, until_date):
        """
        Returns the submissions originally received between from_date and until_date
        (including subsequent resubmissions, even if those came in later).
        """
        identifiers = []
Jorran de Wit's avatar
Jorran de Wit committed
        for sub in self.filter(is_resubmission_of__isnull=True,
                               submission_date__range=(from_date, until_date)):
Jorran de Wit's avatar
Jorran de Wit committed
            identifiers.append(sub.preprint.identifier_wo_vn_nr)
        return self.filter(preprint__identifier_wo_vn_nr__in=identifiers)
    def accepted(self):
Jorran de Wit's avatar
Jorran de Wit committed
        """Return accepted Submissions."""
        return self.filter(status=constants.STATUS_ACCEPTED)
Jorran de Wit's avatar
Jorran de Wit committed
    def revision_requested(self):
Jorran de Wit's avatar
Jorran de Wit committed
        """Return Submissions with a fixed EICRecommendation: minor or major revision."""
        return self.filter(
            eicrecommendations__status=constants.DECISION_FIXED,
Jorran de Wit's avatar
Jorran de Wit committed
            eicrecommendations__recommendation__in=[
                constants.REPORT_MINOR_REV, constants.REPORT_MAJOR_REV])
    def published(self):
Jorran de Wit's avatar
Jorran de Wit committed
        """Return published Submissions."""
        return self.filter(status=constants.STATUS_PUBLISHED)
Jorran de Wit's avatar
Jorran de Wit committed
    def unpublished(self):
        """Return unpublished Submissions."""
        return self.exclude(status=constants.STATUS_PUBLISHED)

Jean-Sébastien Caux's avatar
Jean-Sébastien Caux committed
    def assignment_failed(self):
Jorran de Wit's avatar
Jorran de Wit committed
        """Return Submissions which have failed assignment."""
        return self.filter(status=constants.STATUS_ASSIGNMENT_FAILED)
Jean-Sébastien Caux's avatar
Jean-Sébastien Caux committed

    def rejected(self):
Jorran de Wit's avatar
Jorran de Wit committed
        """Return rejected Submissions."""
        return self._newest_version_only(self.filter(status=constants.STATUS_REJECTED))
Jean-Sébastien Caux's avatar
Jean-Sébastien Caux committed

    def withdrawn(self):
Jorran de Wit's avatar
Jorran de Wit committed
        """Return withdrawn Submissions."""
        return self._newest_version_only(self.filter(status=constants.STATUS_WITHDRAWN))
    def open_for_reporting(self):
Jorran de Wit's avatar
Jorran de Wit committed
        """Return Submission that allow for reporting."""
        return self.filter(open_for_reporting=True)
    def open_for_commenting(self):
Jorran de Wit's avatar
Jorran de Wit committed
        """Return Submission that allow for commenting."""
        return self.filter(open_for_commenting=True)

Jorran de Wit's avatar
Jorran de Wit committed
    def needs_conflicts_update(self):
        """Return set of Submissions that need an ConflictOfInterest update."""
        return self.filter(needs_conflicts_update=True)

    def has_editor_invitations_to_be_sent(self):
        """Return Submissions that have EditorialAssignments that still need to be sent."""
        return self.filter(editorial_assignments__status=constants.STATUS_PREASSIGNED)

    def candidate_for_resubmission(self, user):
Jorran de Wit's avatar
Jorran de Wit committed
        """
        Return all Submissions that are open for resubmission specialised for a certain User.
Jorran de Wit's avatar
Jorran de Wit committed
        """
        if not hasattr(user, 'contributor'):
Jorran de Wit's avatar
Jorran de Wit committed
            return self.none()

        return self.filter(is_current=True, status__in=[
            constants.STATUS_INCOMING, constants.STATUS_UNASSIGNED, constants.STATUS_EIC_ASSIGNED,
            ], authors=user.contributor)
Jorran de Wit's avatar
Jorran de Wit committed

class SubmissionEventQuerySet(models.QuerySet):
    def for_author(self):
        """Return all events that are meant to be for the author(s) of a submission."""
Jorran de Wit's avatar
Jorran de Wit committed
        return self.filter(event__in=[constants.EVENT_FOR_AUTHOR, constants.EVENT_GENERAL])
        """Return all events that are meant to be for the Editor-in-charge of a submission."""
Jorran de Wit's avatar
Jorran de Wit committed
        return self.filter(event__in=[constants.EVENT_FOR_EIC, constants.EVENT_GENERAL])
    def last_hours(self, hours=24):
        """Return all events of the last `hours` hours."""
        return self.filter(created__gte=timezone.now() - datetime.timedelta(hours=hours))

    def plagiarism_report_to_be_uploaded(self):
        """Return Submissions that has not been sent to iThenticate for their plagiarism check."""
        return self.filter(
            models.Q(plagiarism_report__isnull=True) |
            models.Q(plagiarism_report__status=constants.STATUS_WAITING)).distinct()

    def plagiarism_report_to_be_updated(self):
        """Return Submissions for which their iThenticateReport has not received a report yet."""
        return self.filter(plagiarism_report__status=constants.STATUS_SENT)

class EditorialAssignmentQuerySet(models.QuerySet):
    def get_for_user_in_pool(self, user):
        return self.exclude(submission__authors=user.contributor).exclude(
            Q(submission__author_list__icontains=user.last_name),
            ~Q(submission__authors_false_claims=user.contributor))
Jorran de Wit's avatar
Jorran de Wit committed
    def auto_reminders_allowed(self):
        return self.filter(auto_reminders_allowed=True)

    def last_year(self):
        return self.filter(date_created__gt=timezone.now() - timezone.timedelta(days=365))

Jorran de Wit's avatar
Jorran de Wit committed
    def refereeing_deadline_within(self, days=7):
        return self.exclude(
            submission__reporting_deadline__gt=timezone.now() + timezone.timedelta(days=days)
            ).exclude(submission__reporting_deadline__lt=timezone.now())
    def next_invitation_to_be_sent(self, submission_id):
        """Return EditorialAssignment that needs to be sent next."""
        try:
            latest_date_invited = self.invited().filter(
                submission__id=submission_id,
                date_invited__isnull=False).latest('date_invited').date_invited
            if latest_date_invited:
                return_next = latest_date_invited < timezone.now() - settings.ED_ASSIGMENT_DT_DELTA
            else:
                return_next = True
        except self.model.DoesNotExist:
            return_next = True

        if not return_next:
            return None

        return self.filter(
            submission__id=submission_id,
            status=constants.STATUS_PREASSIGNED).order_by('invitation_order').first()

Jorran de Wit's avatar
Jorran de Wit committed
    def preassigned(self):
        return self.filter(status=constants.STATUS_PREASSIGNED)
Jorran de Wit's avatar
5.  
Jorran de Wit committed
    def invited(self):
Jorran de Wit's avatar
Jorran de Wit committed
        return self.filter(status=constants.STATUS_INVITED)
    def need_response(self):
        """Return EdAssignments that are non-deprecated or without response."""
        return self.filter(status__in=[constants.STATUS_PREASSIGNED, constants.STATUS_INVITED])

    def ongoing(self):
Jorran de Wit's avatar
Jorran de Wit committed
        return self.filter(status=constants.STATUS_ACCEPTED)
Jorran de Wit's avatar
Jorran de Wit committed
    def accepted(self):
        return self.filter(status__in=[constants.STATUS_ACCEPTED, constants.STATUS_COMPLETED])
Jorran de Wit's avatar
Jorran de Wit committed
    def declined(self):
        return self.filter(status=constants.STATUS_DECLINED)

    def declined_red(self):
        """Return EditorialAssignments declined with a 'red-label reason'."""
        return self.declined().filter(refusal_reason__in=['NIE', 'DNP'])

Jorran de Wit's avatar
Jorran de Wit committed
    def deprecated(self):
Jorran de Wit's avatar
Jorran de Wit committed
        return self.filter(status=constants.STATUS_DEPRECATED)
Jorran de Wit's avatar
Jorran de Wit committed

    def completed(self):
        return self.filter(status=constants.STATUS_COMPLETED)
Jorran de Wit's avatar
Jorran de Wit committed
class EICRecommendationQuerySet(models.QuerySet):
Jorran de Wit's avatar
Jorran de Wit committed
    """QuerySet for the EICRecommendation model."""
    def user_must_vote_on(self, user):
        """Return the subset of EICRecommendation the User is requested to vote on."""
Jorran de Wit's avatar
Jorran de Wit committed
        if not hasattr(user, 'contributor'):
            return self.none()

Jorran de Wit's avatar
Jorran de Wit committed
        return self.put_to_voting().filter(eligible_to_vote=user.contributor).exclude(
            recommendation__in=[-1, -2]).exclude(
                models.Q(voted_for=user.contributor) | models.Q(voted_against=user.contributor) |
                models.Q(voted_abstain=user.contributor)).exclude(submission__status__in=[
                    constants.STATUS_REJECTED,
                    constants.STATUS_PUBLISHED,
                    constants.STATUS_WITHDRAWN]).distinct()
    def user_current_voted(self, user):
        """
        Return the subset of EICRecommendations currently undergoing voting, for
        which the User has already voted.
        """
        if not hasattr(user, 'contributor'):
            return self.none()
        return self.put_to_voting().filter(eligible_to_vote=user.contributor).exclude(
            recommendation__in=[-1, -2]).filter(
                models.Q(voted_for=user.contributor) | models.Q(voted_against=user.contributor) |
                models.Q(voted_abstain=user.contributor)).exclude(submission__status__in=[
                    constants.STATUS_REJECTED,
                    constants.STATUS_PUBLISHED,
                    constants.STATUS_WITHDRAWN]).distinct()
Jorran de Wit's avatar
Jorran de Wit committed
    def put_to_voting(self):
Jorran de Wit's avatar
Jorran de Wit committed
        """Return the subset of EICRecommendation currently undergoing voting."""
        return self.filter(status=constants.PUT_TO_VOTING)
Jorran de Wit's avatar
Jorran de Wit committed

    def voting_in_preparation(self):
Jorran de Wit's avatar
Jorran de Wit committed
        """Return the subset of EICRecommendation currently undergoing preparation for voting."""
        return self.filter(status=constants.VOTING_IN_PREP)
    def active(self):
Jorran de Wit's avatar
Jorran de Wit committed
        """Return the subset of EICRecommendation most recent, valid versions."""
Jorran de Wit's avatar
Jorran de Wit committed
        return self.exclude(status=constants.DEPRECATED)
Jorran de Wit's avatar
Jorran de Wit committed
    def fixed(self):
        """Return the subset of fixed EICRecommendations."""
        return self.filter(status=constants.DECISION_FIXED)

    def asking_revision(self):
        """Return EICRecommendation asking for a minor or major revision."""
        return self.filter(recommendation__in=[-1, -2])

class ReportQuerySet(models.QuerySet):
Jorran de Wit's avatar
Jorran de Wit committed
    """QuerySet for the Report model."""

    def accepted(self):
Jorran de Wit's avatar
Jorran de Wit committed
        """Return the subset of vetted Reports."""
Jorran de Wit's avatar
Jorran de Wit committed
        return self.filter(status=constants.STATUS_VETTED)

    def awaiting_vetting(self):
Jorran de Wit's avatar
Jorran de Wit committed
        """Return the subset of unvetted Reports."""
Jorran de Wit's avatar
Jorran de Wit committed
        return self.filter(status=constants.STATUS_UNVETTED)

    def rejected(self):
Jorran de Wit's avatar
Jorran de Wit committed
        """Return the subset of rejected Reports."""
Jorran de Wit's avatar
Jorran de Wit committed
        return self.filter(status__in=[
            constants.STATUS_UNCLEAR, constants.STATUS_INCORRECT, constants.STATUS_NOT_USEFUL,
            constants.STATUS_NOT_ACADEMIC])
    def in_draft(self):
Jorran de Wit's avatar
Jorran de Wit committed
        """Return the subset of Reports in draft."""
Jorran de Wit's avatar
Jorran de Wit committed
        return self.filter(status=constants.STATUS_DRAFT)
Jorran de Wit's avatar
Jorran de Wit committed
        """Return the subset of unvetted, vetted and rejected Reports."""
Jorran de Wit's avatar
Jorran de Wit committed
        return self.exclude(status=constants.STATUS_DRAFT)

    def contributed(self):
Jorran de Wit's avatar
Jorran de Wit committed
        """Return the subset of contributed Reports."""
        return self.filter(invited=False)

    def invited(self):
Jorran de Wit's avatar
Jorran de Wit committed
        """Return the subset of invited Reports."""
        return self.filter(invited=True)


class RefereeInvitationQuerySet(models.QuerySet):
Jorran de Wit's avatar
Jorran de Wit committed
    """Queryset for RefereeInvitation model."""

    def awaiting_response(self):
Jorran de Wit's avatar
Jorran de Wit committed
        """Filter invitations awaiting response by referee."""
        return self.filter(accepted=None, cancelled=False)
    def pending(self):
Jorran de Wit's avatar
Jorran de Wit committed
        """DEPRECATED."""
        return self.awaiting_response()

    def open(self):
        """DEPRECATED."""
        return self.awaiting_response()

    def accepted(self):
Jorran de Wit's avatar
Jorran de Wit committed
        """Filter invitations (non-cancelled) accepted by referee."""
Jorran de Wit's avatar
Jorran de Wit committed
        return self.filter(accepted=True, cancelled=False)

    def declined(self):
Jorran de Wit's avatar
Jorran de Wit committed
        """Filter invitations declined by referee."""
        return self.filter(accepted=False)
    def open(self): # WRONG: pending already filters for cancelled=False
        return self.pending().filter(cancelled=False)

    def outstanding(self):
        return self.filter(cancelled=False).exclude(accepted=False).exclude(fulfilled=True)

    def in_process(self):
Jorran de Wit's avatar
Jorran de Wit committed
        """Filter invitations (non-cancelled) accepted by referee that are not fulfilled."""
        return self.accepted().filter(fulfilled=False, cancelled=False)
Jorran de Wit's avatar
Jorran de Wit committed
    def non_cancelled(self):
        """Return invitations awaiting reponse, accepted or fulfilled."""
        return self.filter(cancelled=False)

    def needs_attention(self):
        """Filter invitations that needs attention.

        The following is defined as `needs attention`:
        1. not responded to invite in more than 3 days.
        2. not fulfilled (but accepted) with deadline within 7 days.
        """
        compare_3_days = timezone.now() + datetime.timedelta(days=3)
        compare_7_days = timezone.now() + datetime.timedelta(days=7)
        return self.filter(cancelled=False, fulfilled=False).filter(
            Q(accepted=None, date_last_reminded__lt=compare_3_days) |
            Q(accepted=True, submission__reporting_deadline__lt=compare_7_days)).distinct()

    def approaching_deadline(self, days=2):
Jorran de Wit's avatar
Jorran de Wit committed
        """Filter non-fulfilled invitations for which the deadline is within `days` days."""
        qs = self.in_process()
        pseudo_deadline = now + datetime.timedelta(days)
Jorran de Wit's avatar
Jorran de Wit committed
        deadline = datetime.datetime.now()
        qs = qs.filter(submission__reporting_deadline__lte=pseudo_deadline,
Jorran de Wit's avatar
Jorran de Wit committed
                       submission__reporting_deadline__gte=deadline)
        return qs

    def overdue(self):
Jorran de Wit's avatar
Jorran de Wit committed
        """Filter non-fulfilled invitations that are overdue."""
Jorran de Wit's avatar
Jorran de Wit committed
        return self.in_process().filter(submission__reporting_deadline__lte=now)


class EditorialCommunicationQueryset(models.QuerySet):
    def for_referees(self):
Jorran de Wit's avatar
Jorran de Wit committed
        """Only return communication between Referees and Editors."""
        return self.filter(comtype__in=['EtoR', 'RtoE'])
Jorran de Wit's avatar
Jorran de Wit committed

    def for_authors(self):
        """Only return communication between Authors and Editors."""
        return self.filter(comtype__in=['EtoA', 'AtoE'])