forms.py

import os
import re

from datetime import datetime

from django import forms
from django.conf import settings
from django.forms import BaseModelFormSet, modelformset_factory
from django.utils import timezone

from .constants import STATUS_DRAFT, PUBLICATION_PREPUBLISHED, PUBLICATION_PUBLISHED
from .exceptions import PaperNumberingError
from .models import Issue, Publication, Reference, UnregisteredAuthor, PublicationAuthorsTable
from .utils import JournalUtils


from funders.models import Grant
from mails.utils import DirectMailUtil
from production.constants import PROOFS_PUBLISHED
from production.models import ProductionEvent
from production.signals import notify_stream_status_change
from scipost.forms import RequestFormMixin
from scipost.services import DOICaller
from submissions.models import Submission


class InitiatePublicationForm(forms.Form):
    accepted_submission = forms.ModelChoiceField(queryset=Submission.objects.accepted())
    to_be_issued_in = forms.ModelChoiceField(
        queryset=Issue.objects.filter(until_date__gte=timezone.now()))

    def __init__(self, *args, **kwargs):
        super(InitiatePublicationForm, self).__init__(*args, **kwargs)


class ValidatePublicationForm(forms.ModelForm):
    class Meta:
        model = Publication
        exclude = ['authors_claims', 'authors_false_claims',
                   'metadata', 'metadata_xml', 'authors_registered',
                   'authors_unregistered', 'latest_activity']


class UnregisteredAuthorForm(forms.ModelForm):
    class Meta:
        model = UnregisteredAuthor
        fields = ('first_name', 'last_name')


class CitationListBibitemsForm(forms.Form):
    latex_bibitems = forms.CharField(widget=forms.Textarea())

    def __init__(self, *args, **kwargs):
        super().__init__(*args, **kwargs)
        self.fields['latex_bibitems'].widget.attrs.update(
            {'placeholder': 'Paste the .tex bibitems here'})

    def extract_dois(self):
        entries_list = self.cleaned_data['latex_bibitems']
        entries_list = re.sub(r'(?m)^\%.*\n?', '', entries_list)
        entries_list = entries_list.split('\doi{')
        dois = []
        nentries = 1
        for entry in entries_list[1:]:  # drop first bit before first \doi{
            dois.append(
                {'key': 'ref' + str(nentries),
                 'doi': entry.partition('}')[0], }
            )
            nentries += 1
        return dois


class FundingInfoForm(forms.ModelForm):
    funding_statement = forms.CharField(widget=forms.Textarea({
        'placeholder': 'Paste the funding info statement here'}))

    class Meta:
        model = Publication
        fields = ()

    def save(self, *args, **kwargs):
        self.instance.metadata['funding_statement'] = self.cleaned_data['funding_statement']
        return super().save(*args, **kwargs)


class CreateMetadataXMLForm(forms.ModelForm):
    class Meta:
        model = Publication
        fields = ['metadata_xml']


class CreateMetadataDOAJForm(forms.ModelForm):
    class Meta:
        model = Publication
        fields = ()

    def __init__(self, *args, **kwargs):
        self.request = kwargs.pop('request')
        super().__init__(*args, **kwargs)

    def save(self, *args, **kwargs):
        self.instance.metadata_DOAJ = self.generate(self.instance)
        return super().save(*args, **kwargs)

    def generate(self, publication):
        md = {
            'bibjson': {
                'author': [{'name': publication.author_list}],
                'title': publication.title,
                'abstract': publication.abstract,
                'year': publication.publication_date.strftime('%Y'),
                'month': publication.publication_date.strftime('%m'),
                'start_page': publication.get_paper_nr(),
                'identifier': [
                    {
                        'type': 'eissn',
                        'id': str(publication.in_issue.in_volume.in_journal.issn)
                    },
                    {
                        'type': 'doi',
                        'id': publication.doi_string
                    }
                ],
                'link': [
                    {
                        'url': self.request.build_absolute_uri(publication.get_absolute_url()),
                        'type': 'fulltext',
                    }
                ],
                'journal': {
                    'publisher': 'SciPost',
                    'volume': str(publication.in_issue.in_volume.number),
                    'number': str(publication.in_issue.number),
                    'identifier': [{
                        'type': 'eissn',
                        'id': str(publication.in_issue.in_volume.in_journal.issn)
                    }],
                    'license': [
                        {
                            'url': self.request.build_absolute_uri(
                                publication.in_issue.in_volume.in_journal.get_absolute_url()),
                            'open_access': 'true',
                            'type': publication.get_cc_license_display(),
                            'title': publication.get_cc_license_display(),
                        }
                    ],
                    'language': ['EN'],
                    'title': publication.in_issue.in_volume.in_journal.get_name_display(),
                }
            }
        }
        return md


class BaseReferenceFormSet(BaseModelFormSet):
    """
    BaseReferenceFormSet is used to help fill the Reference list for Publications

    It is required to add the required keyword argument `publication` to this FormSet.
    """
    initial_references = []

    def __init__(self, *args, **kwargs):
        self.publication = kwargs.pop('publication')
        extra = kwargs.pop('extra')
        self.extra = int(extra if extra else '0')
        kwargs['form_kwargs'] = {'publication': self.publication}
        super().__init__(*args, **kwargs)

    def prefill(self):
        citations = self.publication.metadata.get('citation_list', [])

        for cite in citations:
            caller = DOICaller(cite['doi'])

            if caller.is_valid:
                # Authors
                author_list = []
                for author in caller._crossref_data['author'][:3]:
                    try:
                        author_list.append('{}. {}'.format(author['given'][0], author['family']))
                    except KeyError:
                        author_list.append(author['name'])

                if len(author_list) > 2:
                    authors = ', '.join(author_list[:-1])
                    authors += ' and ' + author_list[-1]
                else:
                    authors = ' and '.join(author_list)

                # Citation
                citation = '<em>{}</em> {} <b>{}</b>, {} ({})'.format(
                    caller.data['title'],
                    caller.data['journal'],
                    caller.data['volume'],
                    caller.data['pages'],
                    datetime.strptime(caller.data['pub_date'], '%Y-%m-%d').year)

                self.initial_references.append({
                    'reference_number': cite['key'][3:],
                    'authors': authors,
                    'citation': citation,
                    'identifier': cite['doi'],
                    'link': 'https://doi.org/{}'.format(cite['doi']),
                })
            else:
                self.initial_references.append({
                    'reference_number': cite['key'][3:],
                    'identifier': cite['doi'],
                    'link': 'https://doi.org/{}'.format(cite['doi']),
                })

        # Add prefill information to the form
        if not self.initial_extra:
            self.initial_extra = self.initial_references
        else:
            self.initial_extra.extend(self.initial_references)
        self.extra += len(self.initial_extra)


class ReferenceForm(forms.ModelForm):
    class Meta:
        model = Reference
        fields = [
            'reference_number',
            'authors',
            'citation',
            'identifier',
            'link',
        ]

    def __init__(self, *args, **kwargs):
        self.publication = kwargs.pop('publication')
        super().__init__(*args, **kwargs)

    def save(self, *args, **kwargs):
        self.instance.publication = self.publication
        super().save(*args, **kwargs)


ReferenceFormSet = modelformset_factory(Reference, formset=BaseReferenceFormSet,
                                        form=ReferenceForm, can_delete=True)


class DraftPublicationForm(forms.ModelForm):
    """
    This Form is used by the Production Supervisors to create a new Publication object
    and prefill all data. It is only able to create a `draft` version of a Publication object.
    """
    class Meta:
        model = Publication
        fields = [
            'doi_label',
            'pdf_file',
            'in_issue',
            'paper_nr',
            'title',
            'author_list',
            'abstract',
            'discipline',
            'domain',
            'subject_area',
            'secondary_areas',
            'cc_license',
            'BiBTeX_entry',
            'submission_date',
            'acceptance_date',
            'publication_date']

    def __init__(self, data=None, arxiv_identifier_w_vn_nr=None, issue_id=None, *args, **kwargs):
        # Use separate instance to be able to prefill the form without any existing Publication
        self.submission = None
        self.issue = None
        if arxiv_identifier_w_vn_nr:
            try:
                self.submission = Submission.objects.accepted().get(
                    arxiv_identifier_w_vn_nr=arxiv_identifier_w_vn_nr)
            except Submission.DoesNotExist:
                self.submission = None
        if issue_id:
            self.issue = Issue.objects.filter(until_date__gte=timezone.now()).get(id=issue_id)
        super().__init__(data, *args, **kwargs)
        if kwargs.get('instance') or self.issue:
            # When updating: fix in_issue, because many fields are directly related to the issue.
            del self.fields['in_issue']
            self.prefill_fields()
        else:
            self.fields['in_issue'].queryset = Issue.objects.filter(until_date__gte=timezone.now())
            self.delete_secondary_fields()

    def delete_secondary_fields(self):
        """
        Delete fields from the self.fields dictionary. Later on, this submitted sparse form can
        be used to prefill these secondary fields.
        """
        del self.fields['doi_label']
        del self.fields['pdf_file']
        del self.fields['paper_nr']
        del self.fields['title']
        del self.fields['author_list']
        del self.fields['abstract']
        del self.fields['discipline']
        del self.fields['domain']
        del self.fields['subject_area']
        del self.fields['secondary_areas']
        del self.fields['cc_license']
        del self.fields['BiBTeX_entry']
        del self.fields['submission_date']
        del self.fields['acceptance_date']
        del self.fields['publication_date']

    def save(self, *args, **kwargs):
        """
        Save the Publication object always as a draft and prefill the Publication with
        related Submission data only when appending the Publication.
        """
        do_prefill = False
        if not self.instance.id:
            do_prefill = True
            if self.submission:
                self.instance.accepted_submission = self.submission
            self.instance.in_issue = self.issue
        self.instance = super().save(*args, **kwargs)
        if do_prefill:
            self.first_time_fill()
        return self.instance

    def first_time_fill(self):
        """
        Take over fields from related Submission object. This can only be done after
        the Publication object has been added to the database due to m2m relations.
        """
        self.instance.status = STATUS_DRAFT

        if self.submission:
            # Copy all existing author and non-author relations to Publication
            for submission_author in self.submission.authors.all():
                PublicationAuthorsTable.objects.create(
                    publication=self.instance, contributor=submission_author)
            self.instance.authors_claims.add(*self.submission.authors_claims.all())
            self.instance.authors_false_claims.add(*self.submission.authors_false_claims.all())

        # Add Institutions to the publication related to the current authors
        for author in self.instance.authors_registered.all():
            for current_affiliation in author.affiliations.active():
                self.instance.institutions.add(current_affiliation.institution)

    def prefill_fields(self):
        if self.submission:
            self.fields['title'].initial = self.submission.title
            self.fields['author_list'].initial = self.submission.author_list
            self.fields['abstract'].initial = self.submission.abstract
            self.fields['discipline'].initial = self.submission.discipline
            self.fields['domain'].initial = self.submission.domain
            self.fields['subject_area'].initial = self.submission.subject_area
            self.fields['secondary_areas'].initial = self.submission.secondary_areas
            self.fields['submission_date'].initial = self.submission.submission_date
            self.fields['acceptance_date'].initial = self.submission.acceptance_date

        # Fill data that may be derived from the issue data
        issue = self.instance.in_issue if hasattr(self.instance, 'in_issue') else self.issue
        if issue:
            # Determine next available paper number:
            paper_nr = Publication.objects.filter(in_issue__in_volume=issue.in_volume).count()
            paper_nr += paper_nr
            if paper_nr > 999:
                raise PaperNumberingError(paper_nr)
            self.fields['paper_nr'].initial = str(paper_nr)
            doi_label = '{journal}.{vol}.{issue}.{paper}'.format(
                journal=issue.in_volume.in_journal.name,
                vol=issue.in_volume.number,
                issue=issue.number,
                paper=str(paper_nr).rjust(3, '0'))
            self.fields['doi_label'].initial = doi_label

            doi_string = '10.21468/{doi}'.format(doi=doi_label)
            bibtex_entry = (
                '@Article{%s,\n'
                '\ttitle={{%s},\n'
                '\tauthor={%s},\n'
                '\tjournal={%s},\n'
                '\tvolume={%i},\n'
                '\tissue={%i},\n'
                '\tpages={%i},\n'
                '\tyear={%s},\n'
                '\tpublisher={SciPost},\n'
                '\tdoi={%s},\n'
                '\turl={https://scipost.org/%s},\n'
                '}'
            ) % (
                doi_string,
                self.submission.title,
                self.submission.author_list.replace(',', ' and'),
                issue.in_volume.in_journal.get_abbreviation_citation(),
                issue.in_volume.number,
                issue.number,
                paper_nr,
                issue.until_date.strftime('%Y'),
                doi_string,
                doi_string)
            self.fields['BiBTeX_entry'].initial = bibtex_entry
            if not self.instance.BiBTeX_entry:
                self.instance.BiBTeX_entry = bibtex_entry


class DraftPublicationApprovalForm(forms.ModelForm):
    class Meta:
        model = Publication
        fields = ()

    def save(self, commit=True):
        self.instance.status = PUBLICATION_PREPUBLISHED
        if commit:
            self.instance.save()
            mail_sender = DirectMailUtil(mail_code='publication_ready', instance=self.instance)
            mail_sender.send()
        return self.instance


class PublicationGrantsForm(forms.ModelForm):
    grant = forms.ModelChoiceField(queryset=Grant.objects.none())

    class Meta:
        model = Publication
        fields = []

    def __init__(self, *args, **kwargs):
        super().__init__(*args, **kwargs)
        self.fields['grant'].queryset = Grant.objects.exclude(
            id__in=self.instance.grants.values_list('id', flat=True))

    def save(self, commit=True):
        if commit:
            self.instance.grants.add(self.cleaned_data['grant'])
        return self.instance


class PublicationPublishForm(RequestFormMixin, forms.ModelForm):
    class Meta:
        model = Publication
        fields = []

    def move_pdf(self):
        # Move file to final location
        initial_path = self.instance.pdf_file.path
        new_dir = (settings.MEDIA_ROOT + self.instance.in_issue.path + '/'
                   + self.instance.get_paper_nr())
        new_path = new_dir + '/' + self.instance.doi_label.replace('.', '_') + '.pdf'
        os.makedirs(new_dir)
        os.rename(initial_path, new_path)
        self.instance.pdf_file.name = new_path
        self.instance.status = PUBLICATION_PUBLISHED
        self.instance.save()

    def update_submission(self):
        # Mark the submission as having been published:
        submission = self.instance.accepted_submission
        submission.published_as = self.instance
        submission.status = 'published'
        submission.save()

        # Add SubmissionEvents
        submission.add_general_event(
            'The Submission has been published as %s.' % self.instance.doi_label)

    def update_stream(self):
        # Update ProductionStream
        submission = self.instance.accepted_submission
        if hasattr(submission, 'production_stream'):
            stream = submission.production_stream
            stream.status = PROOFS_PUBLISHED
            stream.save()
            if self.request.user.production_user:
                prodevent = ProductionEvent(
                    stream=stream,
                    event='status',
                    comments=' published the manuscript.',
                    noted_by=self.request.user.production_user
                )
                prodevent.save()
            notify_stream_status_change(self.request.user, stream, False)

    def save(self, commit=True):
        if commit:
            self.move_pdf()
            self.update_submission()
            self.update_stream()

            # Email authors
            JournalUtils.load({'publication': self.instance})
            JournalUtils.send_authors_paper_published_email()
        return self.instance