Merge branch 'master' into staging

apimail/management/commands/mailgun_validate_address.py

+__copyright__ = "Copyright © Stichting SciPost (SciPost Foundation)"
+__license__ = "AGPL v3"
+
+
+import requests
+
+from django.conf import settings
+from django.core.management import BaseCommand
+
+
+def validate_address(address=None):
+    if address:
+        response = requests.get(
+             "https://api.mailgun.net/v4/address/validate",
+            auth=("api", settings.MAILGUN_API_KEY),
+            params={"address": address}
+        ).json()
+        return response
+
+
+class Command(BaseCommand):
+
+    def add_arguments(self, parser):
+        parser.add_argument(
+            '--address', type=str, required=False,
+            help='email address to validate')
+
+    def handle(self, *args, **options):
+        result = validate_address(options.get('address'))
+        print(result)

journals/migrations/0103_journal_submission_insert.py

+# Generated by Django 2.2.16 on 2020-10-26 20:17
+
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ('journals', '0102_auto_20200930_0602'),
+    ]
+
+    operations = [
+        migrations.AddField(
+            model_name='journal',
+            name='submission_insert',
+            field=models.TextField(blank=True, default='[Optional; you can use markup]', null=True),
+        ),
+    ]

journals/migrations/0104_auto_20201026_2144.py

+# Generated by Django 2.2.16 on 2020-10-26 20:44
+
+import django.core.validators
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ('journals', '0103_journal_submission_insert'),
+    ]
+
+    operations = [
+        migrations.AlterField(
+            model_name='issue',
+            name='doi_label',
+            field=models.CharField(db_index=True, max_length=200, unique=True, validators=[django.core.validators.RegexValidator('^((SciPost)[a-zA-Z]+|(MigPol))\\.\\w+(\\.[0-9]+)?$', 'Only expressions with regex ((SciPost)[a-zA-Z]+|(MigPol))\\.\\w+(\\.[0-9]+)? are allowed.')]),
+        ),
+        migrations.AlterField(
+            model_name='journal',
+            name='doi_label',
+            field=models.CharField(db_index=True, max_length=200, unique=True, validators=[django.core.validators.RegexValidator('^(SciPost)[a-zA-Z]+|(MigPol)$', 'Only expressions with regex (SciPost)[a-zA-Z]+|(MigPol) are allowed.')]),
+        ),
+        migrations.AlterField(
+            model_name='publication',
+            name='doi_label',
+            field=models.CharField(db_index=True, max_length=200, unique=True, validators=[django.core.validators.RegexValidator('^((SciPost)[a-zA-Z]+|(MigPol))(\\.\\w+(\\.[0-9]+(\\.[0-9]{3,})?)?)?$', 'Only expressions with regex ((SciPost)[a-zA-Z]+|(MigPol))(\\.\\w+(\\.[0-9]+(\\.[0-9]{3,})?)?)? are allowed.')]),
+        ),
+        migrations.AlterField(
+            model_name='volume',
+            name='doi_label',
+            field=models.CharField(db_index=True, max_length=200, unique=True, validators=[django.core.validators.RegexValidator('^((SciPost)[a-zA-Z]+|(MigPol)\\.\\w)$', 'Only expressions with regex ((SciPost)[a-zA-Z]+|(MigPol)\\.\\w) are allowed.')]),
+        ),
+    ]

journals/models/journal.py

@@ -70,6 +70,8 @@ class Journal(models.Model):
     scope = models.TextField(default='[To be filled in; you can use markup]')
     content = models.TextField(default='[To be filled in; you can use markup]')
     acceptance_criteria = models.TextField(default='[To be filled in; you can use markup]')
+    submission_insert = models.TextField(blank=True, null=True,
+                                         default='[Optional; you can use markup]')
     minimal_nr_of_reports = models.PositiveSmallIntegerField(
         help_text=('Minimal number of substantial Reports required '
                    'before an acceptance motion can be formulated'),

journals/regexes.py

@@ -2,7 +2,7 @@ __copyright__ = "Copyright © Stichting SciPost (SciPost Foundation)"
 __license__ = "AGPL v3"
 
 
-JOURNAL_DOI_LABEL_REGEX = r'(SciPost|MigPol)[a-zA-Z]+'
+JOURNAL_DOI_LABEL_REGEX = r'(SciPost)[a-zA-Z]+|(MigPol)'
 
 VOLUME_DOI_LABEL_REGEX = r'({}\.\w)'.format(JOURNAL_DOI_LABEL_REGEX)
 

journals/templates/journals/about.html

@@ -84,7 +84,8 @@
       <h2 class="highlight" id="sub_and_ed">
 	Submission and Editorial Process
       </h2>
-      <p>Authors should follow the <a href="{% url 'journal:authoring' doi_label=journal.doi_label %}">authoring guidelines</a> to ensure seamless processing of their manuscript. The <a href="{% url 'journals:journals_terms_and_conditions' %}">SciPost Journals Terms and Conditions</a> apply to all Submissions to SciPost Physics.</p>
+      {{ journal.submission_insert|automarkup }}
+      <p>Authors should follow the <a href="{% url 'journal:authoring' doi_label=journal.doi_label %}">authoring guidelines</a> to ensure seamless processing of their manuscript. The <a href="{% url 'journals:journals_terms_and_conditions' %}">SciPost Journals Terms and Conditions</a> apply to all Submissions to {{ journal }}.</p>
       <p>All incoming Submissions are thoroughly checked for plagiarism, and follow the peer-witnessed refereeing procedures outlined in <a href="{% url 'submissions:sub_and_ref_procedure' %}">Submission and Refereeing procedure</a>.</p>
       {% if journal.minimal_nr_of_reports > 0 %}
 	<p><strong>Minimal number of reports</strong>: at least {{ journal.minimal_nr_of_reports }} substantial report{{ journal.minimal_nr_of_reports|pluralize }} must have been received; all points raised must have been addressed either in resubmissions or in author replies before a recommendation for publication can be formulated.</p>

journals/templates/journals/shoji.html

+{% extends 'scipost/base.html' %}
+
+{% block meta_description %}{{ block.super }} SHOJI{% endblock meta_description %}
+{% block pagetitle %}: SHOJI{% endblock pagetitle %}
+
+{% block breadcrumb %}
+  <div class="breadcrumb-container">
+    <div class="container">
+      <nav class="breadcrumb hidden-sm-down">
+        {% block breadcrumb_items %}
+          <a href="{% url 'journals:journals' %}" class="breadcrumb-item">Journals</a>
+          <span class="breadcrumb-item">SHOJI</span>
+	{% endblock %}
+      </nav>
+    </div>
+  </div>
+{% endblock %}
+
+{% block content %}
+  <h1 class="highlight">SciPost-Hosted Open Journals Infrastructure</h1>
+
+  <div class="row">
+    <div class="col-12">
+    </div>
+  </div>
+{% endblock content %}

ontology/context_processors.py

+__copyright__ = "Copyright 2016-2018, Stichting SciPost (SciPost Foundation)"
+__license__ = "AGPL v3"
+
+from .models import Branch, AcademicField, Specialty
+
+
+def ontology_processor(request):
+    """
+    Append branches and acad_fields to the context of all views,
+    and acad_field if session sets it.
+    """
+    context = {
+        'branches': Branch.objects.all(),
+        'acad_fields': AcademicField.objects.all(),
+    }
+    if request.session.get('acad_field_slug', None):
+        context['session_acad_field'] = AcademicField.objects.get(
+            slug=request.session.get('acad_field_slug'))
+    if request.session.get('specialty_slug', None):
+        context['session_specialty'] = Specialty.objects.get(
+            slug=request.session.get('specialty_slug'))
+    return context

scipost/templates/scipost/FAQ_for_scientists.html

+{% extends 'scipost/base.html' %}
+
+{% block meta_description %}{{ block.super }} FAQ for scientists{% endblock meta_description %}
+{% block pagetitle %}: Reasons to switch{% endblock pagetitle %}
+
+{% block breadcrumb_items %}
+  <span class="breadcrumb-item">Reasons to switch</span>
+{% endblock %}
+
+
+{% block content %}
+
+
+
+{% endblock %}

scipost/templates/scipost/about.html

@@ -105,47 +105,69 @@
     <p>These principles are an extension and sharpening up of the <a href="https://www.fairopenaccess.org/" target="_blank" rel="noopener">Fair Open Access Principles</a>, the most important difference being the insistence on the non profit business model.</p>
   </div>
 
-
   <hr>
+
   <div class="row">
     <div class="col-12">
       <h2 class="highlight" id="team">The SciPost Team</h2>
     </div>
   </div>
-  <div class="row justify-content-center">
-    <div class="col-md-4 col-lg-3">
-      <h3><a href="{% url 'scipost:foundation' %}">The SciPost Foundation</a></h3>
-      <ul>
-    	<li>Chairman: Prof. <a href="https://jscaux.org" target="_blank" rel="noopener">J.-S. Caux</a></li>
-    	<li>Secretary: Dr J. van Mameren</li>
-    	<li>Treasurer: Dr J. van Wezel</li>
-      </ul>
-    </div>
-    <div class="col-md-7 col-lg-6">
-      <h3>Code Development and Server Maintenance</h3>
-      <ul>
-    	<li>J.-S. Caux</li>
-    	<li>J. de Wit</li>
-      </ul>
-    </div>
-  </div>
 
-  <div class="row justify-content-center">
-    <div class="col-md-4 col-lg-3">
-      <h3>Editorial and Partners Admin</h3>
-      <ul>
-	<li>P. Perez</li>
-	<li>S. E. Tapias Arze</li>
-      </ul>
-    </div>
-    <div class="col-md-7 col-lg-6">
-      <h3>Production</h3>
-      <ul>
-	<li>L. Ligthart</li>
-	<li>S. Vitouladitis</li>
-	<li>L. Tokic</li>
-	<li>L. van Manen</li>
-      </ul>
+  <div class="card m-2 border-0">
+    <div class="card-body">
+      <div class="row justify-content-center">
+	<div class="col-lg-4">
+	  <ul>
+	    <li class="mb-1">
+	      <strong>Prof. <a href="https://jscaux.org" target="_blank" rel="noopener">J.-S. Caux</a></strong>
+	      <ul class="list-unstyled">
+		<li class="list-unstyled-item"><em>Chairman <a href="{% url 'scipost:foundation' %}">SciPost Foundation</a></em></li>
+		<li class="list-unstyled-item"><em>Coding, Infrastructure</em></li>
+	      </ul>
+	    </li>
+	    <li class="mb-1">
+	      <strong>Dr J. van Mameren</strong>
+	      <ul class="list-unstyled">
+		<li class="list-unstyled-item"><em>Secretary SciPost</em></li>
+	      </ul>
+	    </li>
+	    <li class="mb-1">
+	      <strong>Dr J. van Wezel</strong>
+	      <ul class="list-unstyled">
+		<li class="list-unstyled-item"><em>Treasurer SciPost</em></li>
+	      </ul>
+	    </li>
+	  </ul>
+	</div>
+	<div class="col-lg-4">
+	  <ul>
+	    <li class="mb-1">
+	      <strong>Dr P. Perez</strong>
+	      <ul class="list-unstyled">
+		<li class="list-unstyled-item"><em>Editorial Admin</em></li>
+	      </ul>
+	    </li>
+	    <li class="mb-1">
+	      <strong>S. E. Tapias Arze</strong>
+	      <ul class="list-unstyled">
+		<li class="list-unstyled-item"><em>Editorial and Sponsors Admin</em></li>
+	      </ul>
+	    </li>
+	    <li class="mb-1">
+	      <strong>Dr J. W. Wijnen</strong>
+	      <ul class="list-unstyled">
+		<li class="list-unstyled-item"><em>Strategy Officer</em></li>
+	      </ul>
+	    </li>
+	    <li class="mb-1">
+	      <strong>Teun Zwart</strong>
+	      <ul class="list-unstyled">
+		<li class="list-unstyled-item"><em>Developer</em></li>
+	      </ul>
+	    </li>
+	  </ul>
+	</div>
+      </div>
     </div>
   </div>
 
@@ -223,6 +245,39 @@
     </div>
   </div>
 
+  <div class="card m-2">
+    <div class="card-header text-center">Migration Politics</div>
+    <div class="card-body">
+      <div class="row justify-content-center">
+	<div class="col-lg-3 col-md-4">
+	  <ul>
+	    <li>Prof. Christina Boswell</a><br/><em>Dean of Research, College of Arts, Humanities & Social Sciences</em><br/>(U. of Edinburgh)</li>
+	  </ul>
+	</div>
+	<div class="col-lg-3 col-md-4">
+	  <ul>
+	    <li>Prof. <a target="_blank" rel="noopener" href="https://www.migrationinstitute.org/people/hein">Hein de Haas</a><br/><em>Professor of Sociology</em><br/>(U. of Amsterdam)</li>
+	  </ul>
+	</div>
+	<div class="col-lg-3 col-md-4">
+	  <ul>
+	    <li>Prof. <a target="_blank" rel="noopener" href="www.cds.edu/people/irudaya-rajan-s/qualification.html">Irudaya Rajan</a><br/><em>Centre for Development Studies</em></li>
+	  </ul>
+	</div>
+	<div class="col-lg-3 col-md-4">
+	  <ul>
+	    <li>Prof. <a target="_blank" rel="noopener" href="https://www.faculty.uci.edu/profile.cfm?faculty_id=4965">Kamal Sadiq</a><br/>(UC Irvine)</li>
+	  </ul>
+	</div>
+	<div class="col-lg-3 col-md-4">
+	  <ul>
+	    <li>Prof. <a target="_blank" rel="noopener" href="https://www.mmg.mpg.de/steven-vertovec">Steven Vertovec</a><br/>Founding Director,<br/><em>Max Planck Institute for the Study of Religious and Ethnic Diversity</em></li>
+	  </ul>
+	</div>
+      </div>
+    </div>
+  </div>
+
   <hr>
   <div class="row">
     <div class="col">

scipost/templates/scipost/acad_field_portal.html

+{% extends 'scipost/base.html' %}
+
+{% load render_bundle from webpack_loader %}
+
+
+{% block content %}
+
+  <h1>{{ acad_field.name }} portal</h1>
+
+{% endblock content %}
+
+
+{% block footer_script %}
+{% endblock footer_script %}

scipost/templates/scipost/impact_factor.html

+{% extends 'scipost/base.html' %}
+
+{% block meta_description %}{{ block.super }} Impact Factor{% endblock meta_description %}
+{% block pagetitle %}: Impact Factor{% endblock pagetitle %}
+
+{% block breadcrumb_items %}
+  <span class="breadcrumb-item">Impact Factor</span>
+{% endblock %}
+
+
+{% block content %}
+
+  <h1 class="highlight">SciPost and the Impact Factor</h1>
+
+  <ul>
+    <li>
+      <strong>It greatly disfavours emerging publishing venues</strong>
+      <li>
+	<strong>Any feature it reflects is already outdated, at least for emerging Journals</strong>.
+      </li>
+  </ul>
+
+
+  <h3>Do not be misled by incorrect information from Google</h3>
+  <p>
+    A simple search for <em>"SciPost Physics impact factor"</em> (as of 2020-08-01) on Google brings
+    about a <em>"featured snippet"</em> with journal details
+    stating that the impact factor is 1.067. <strong>This is false information</strong>.
+    We have contacted Google about this, but have not received any acknowledgement from them,
+    let alone a proposal for a solution.</p>
+  <p>
+    This false information from Google is of course very damaging to our initiative, since most
+    people will use this search engine and not think twice about whether the info is correct or not.
+  </p>
+
+{% endblock %}

scipost/templates/scipost/why.html

+{% extends 'scipost/base.html' %}
+
+{% block pagetitle %}: Why SciPost{% endblock pagetitle %}
+
+{% block breadcrumb_items %}
+  <span class="breadcrumb-item">Why SciPost</span>
+{% endblock %}
+
+
+{% block content %}
+
+  <h1 class="highlight">Why SciPost?</h1>
+
+  <ul>
+    <li>Info for scientists</li>
+    <li>Info for librarians/Open Access officers of universities and funding agencies</li>
+  </ul>
+
+  <h2 class="highlight">TL;DR</h2>
+  <p>
+    There are plenty of reasons to switch to SciPost for your scientific publishing needs.
+    Here are a few.
+  </p>
+  <ul>
+    <li>SciPost is by-and-for scientists</li>
+    <li>We offer a fully-featured professional publishing infrastructure</li>
+    <li>All publications at SciPost carry open licenses (CC-BY by default)</li>
+    <li>Authors maintain copyright of their work</li>
+    <li>Our operations are entirely not-for-profit</li>
+    <li>SciPost does not charge any subscription or author fees (APCs)</li>
+    <li>We implement an industry-transforming, cost-slashing business model</li>
+    <li>SciPost has a resolutely international outlook</li>
+    <li>We offer a quality-focused family of Journals</li>
+    <li>Our open refereeing system provides robust and utility-focused pre-publication review</li>
+    <li>Referees get credit for their work through citable reports</li>
+    <li>All editorial decisions at all levels are taken by professionally active scientists</li>
+    <li>Decisions are based exclusively on scientific quality</li>
+    <li>SciPost is entirely free of undue business/profit-making secondary interests</li>
+    <li>Our infrastructure is built on Free(d) and Open Source Software</li>
+    <li>Our production facilities are "top of the class"</li>
+    <li>All publications are professionally archived for long-term posterity</li>
+    <li>SciPost is pushing for modernization of impact evaluation</li>
+  </ul>
+
+{% endblock %}

series/templates/series/collection_detail.html

@@ -63,17 +63,17 @@
 	<div class="col-12">
 	  <h3 class="highlight">Submissions to this Collection</h3>
 	  <ul>
-	    {% for submission in collection.submissions.accepted %}
+	    {% for submission in active_submissions.accepted %}
 	      <li><strong class="text-success">accepted:</strong>&nbsp;
 		<a href="{{ submission.get_absolute_url }}" target="_blank">{{ submission }}</a>
 	      </li>
 	    {% endfor %}
-	    {% for submission in collection.submissions.revision_requested %}
+	    {% for submission in active_submissions.revision_requested %}
 	      <li><strong class="text-primary">awaiting resubmission:</strong>&nbsp;
 		<a href="{{ submission.get_absolute_url }}" target="_blank">{{ submission }}</a>
 	      </li>
 	    {% endfor %}
-	    {% for submission in collection.submissions.actively_refereeing %}
+	    {% for submission in active_submissions.actively_refereeing %}
 	      <li><strong class="text-warning">under refereeing:</strong>&nbsp;
 		<a href="{{ submission.get_absolute_url }}" target="_blank">{{ submission }}</a>
 	      </li>

start_celery_localJSC.sh

+#!/bin/bash
+pkill -f bin/celery
+
+mkdir -p ./local_files/logs
+touch ./local_files/logs/celery_worker.log
+touch ./local_files/logs/celery_beat.log
+touch ./local_files/logs/rabbitmq.log
+
+nohup rabbitmq-server > ./local_files/logs/rabbitmq.log 2>&1 &
+nohup celery -A SciPost_v1 worker --loglevel=info -E > ./local_files/logs/celery_worker.log 2>&1 &
+nohup celery -A SciPost_v1 beat --loglevel=info --scheduler django_celery_beat.schedulers:DatabaseScheduler > ./local_files/logs/celery_beat.log 2>&1 &