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__copyright__ = "Copyright 2016-2018, Stichting SciPost (SciPost Foundation)"
__license__ = "AGPL v3"
import random
import requests
import xml.etree.ElementTree as ET
from django.contrib.auth.decorators import login_required
from django.contrib.contenttypes.models import ContentType
from django.core.exceptions import PermissionDenied
from django.core.paginator import Paginator, EmptyPage, PageNotAnInteger
from django.core.urlresolvers import reverse, reverse_lazy
from django.conf import settings
from django.db import transaction
from django.http import Http404, HttpResponse
from django.utils import timezone
from django.utils.decorators import method_decorator
from django.views.generic.base import TemplateView
from django.views.generic.detail import DetailView
from django.views.generic.edit import UpdateView
from django.shortcuts import get_object_or_404, get_list_or_404, render, redirect
from .constants import STATUS_DRAFT, PUBLICATION_PREPUBLISHED
from .models import Journal, Issue, Publication, Deposit, DOAJDeposit,\
GenericDOIDeposit, PublicationAuthorsTable
from .forms import AbstractJATSForm, FundingInfoForm,\
UnregisteredAuthorForm, AuthorsTableOrganizationSelectForm,\
CreateMetadataXMLForm, CitationListBibitemsForm,\
ReferenceFormSet, CreateMetadataDOAJForm, DraftPublicationForm,\
PublicationGrantsForm, DraftPublicationApprovalForm, PublicationPublishForm,\
from .mixins import PublicationMixin, ProdSupervisorPublicationPermissionMixin
from .utils import JournalUtils
from comments.models import Comment
from funders.forms import FunderSelectForm, GrantSelectForm
from partners.models import Organization
from submissions.models import Submission, Report
from scipost.constants import SCIPOST_SUBJECT_AREAS
from scipost.models import Contributor
from scipost.mixins import PermissionsMixin, RequestViewMixin, PaginationMixin
from guardian.decorators import permission_required
def journals(request):
'''Main landing page for Journals application.'''
return render(request, 'journals/journals.html', context)
class PublicationListView(PaginationMixin, ListView):
"""
Show Publications filtered per subject area.
"""
queryset = Publication.objects.published()
paginate_by = 10
def get_queryset(self):
qs = super().get_queryset()
if self.request.GET.get('journal'):
qs = qs.for_journal(self.request.GET['journal'])
try:
issue = int(self.request.GET['issue'])
except ValueError:
issue = None
if issue:
qs = qs.filter(in_issue__id=issue)
if self.request.GET.get('subject'):
qs = qs.for_subject(self.request.GET['subject'])
if self.request.GET.get('orderby') == 'citations':
qs = qs.order_by('-number_of_citations')
else:
qs = qs.order_by('-publication_date', '-paper_nr')
def get_context_data(self, **kwargs):
context = super().get_context_data(**kwargs)
context['recent_issues'] = Issue.objects.published().order_by('-start_date')[:5]
context['subject_areas'] = (('', 'Show all'),) + SCIPOST_SUBJECT_AREAS[0][1]
return context
def landing_page(request, doi_label):
The landing page of a Journal lists either the latest and the current issue of a Journal
of paginates the individual Publications.
"""
journal = get_object_or_404(Journal, doi_label=doi_label)
'journal': journal,
'most_cited': Publication.objects.for_journal(journal.name).published().most_cited(5),
'latest_publications': Publication.objects.for_journal(journal.name).published()[:5],
'accepted_submissions': Submission.objects.accepted().filter(
submitted_to_journal=journal.name).order_by('-latest_activity'),
return render(request, 'journals/journal_landing_page.html', context)
class IssuesView(DetailView):
"""
List all Issues sorted per Journal.
"""
queryset = Journal.objects.has_issues()
slug_field = slug_url_kwarg = 'doi_label'
template_name = 'journals/journal_issues.html'
def redirect_to_about(request, doi_label):
journal = get_object_or_404(Journal, doi_label=doi_label)
return redirect(
reverse('journal:about', kwargs={'doi_label': journal.doi_label}), permanent=True)
def info_for_authors(request, doi_label):
journal = get_object_or_404(Journal, doi_label=doi_label)
return render(request, 'journals/%s_info_for_authors.html' % doi_label, context)
def about(request, doi_label):
journal = get_object_or_404(Journal, doi_label=doi_label)
return render(request, 'journals/%s_about.html' % doi_label, context)
def issue_detail(request, doi_label):
issue = get_object_or_404(Issue.objects.published(), doi_label=doi_label)
journal = issue.in_volume.in_journal
papers = issue.publications.published().order_by('paper_nr')
next_issue = Issue.objects.published().filter(
in_volume__in_journal=journal, start_date__gt=issue.start_date
).order_by('start_date').first()
prev_issue = Issue.objects.published().filter(
in_volume__in_journal=journal, start_date__lt=issue.start_date
).order_by('start_date').last()
context = {
'issue': issue,
'prev_issue': prev_issue,
'next_issue': next_issue,
return render(request, 'journals/journal_issue_detail.html', context)
#######################
# Publication process #
#######################
class PublicationGrantsView(PermissionsMixin, UpdateView):
"""
Add/update grants associated to a Publication.
"""
permission_required = 'scipost.can_draft_publication'
queryset = Publication.objects.drafts()
slug_field = slug_url_kwarg = 'doi_label'
form_class = PublicationGrantsForm
template_name = 'journals/grants_form.html'
class PublicationGrantsRemovalView(PermissionsMixin, DetailView):
"""
Remove grant associated to a Publication.
"""
permission_required = 'scipost.can_draft_publication'
queryset = Publication.objects.drafts()
slug_field = slug_url_kwarg = 'doi_label'
def get(self, request, *args, **kwargs):
super().get(request, *args, **kwargs)
grant = get_object_or_404(Grant, id=kwargs.get('grant_id'))
self.object.grants.remove(grant)
return redirect(reverse('journals:update_grants', args=(self.object.doi_label,)))
@permission_required('scipost.can_publish_accepted_submission', raise_exception=True)
def publication_authors_ordering(request, doi_label):
publication = get_object_or_404(Publication, doi_label=doi_label)
formset = PublicationAuthorOrderingFormSet(
request.POST or None, queryset=publication.authors.order_by('order'))
if formset.is_valid():
formset.save()
messages.success(request, 'Author ordering updated')
return redirect(publication.get_absolute_url())
context = {
'formset': formset,
'publication': publication,
}
return render(request, 'journals/publication_authors_form.html', context)
class DraftPublicationUpdateView(PermissionsMixin, UpdateView):
"""
Any Production Officer or Administrator can draft a new publication without publishing here.
The actual publishing is done lin a later stadium, after the draft has been finished.
"""
queryset = Publication.objects.unpublished()
slug_url_kwarg = 'arxiv_identifier_w_vn_nr'
slug_field = 'accepted_submission__arxiv_identifier_w_vn_nr'
template_name = 'journals/publication_form.html'
def get_object(self, queryset=None):
try:
publication = Publication.objects.get(
accepted_submission__arxiv_identifier_w_vn_nr=self.kwargs.get(
'arxiv_identifier_w_vn_nr'))
except Publication.DoesNotExist:
if Submission.objects.accepted().filter(arxiv_identifier_w_vn_nr=self.kwargs.get(
'arxiv_identifier_w_vn_nr')).exists():
return None
raise Http404('No accepted Submission found')
if publication.status == STATUS_DRAFT:
return publication
if self.request.user.has_perm('scipost.can_publish_accepted_submission'):
return publication
raise Http404('Found Publication is not in draft')
def get_form_kwargs(self):
kwargs = super().get_form_kwargs()
kwargs['arxiv_identifier_w_vn_nr'] = self.kwargs.get('arxiv_identifier_w_vn_nr')
kwargs['issue_id'] = self.request.GET.get('issue')
return kwargs
class DraftPublicationApprovalView(PermissionsMixin, UpdateView):
permission_required = 'scipost.can_draft_publication'
queryset = Publication.objects.drafts()
slug_field = slug_url_kwarg = 'doi_label'
form_class = DraftPublicationApprovalForm
template_name = 'journals/publication_approval_form.html'
@method_decorator(transaction.atomic, name='dispatch')
class PublicationPublishView(PermissionsMixin, RequestViewMixin, UpdateView):
permission_required = 'scipost.can_publish_accepted_submission'
queryset = Publication.objects.unpublished()
slug_field = slug_url_kwarg = 'doi_label'
form_class = PublicationPublishForm
template_name = 'journals/publication_publish_form.html'
@permission_required('scipost.can_publish_accepted_submission', return_403=True)
def manage_metadata(request, doi_label=None, issue_doi_label=None, journal_doi_label=None):
journal = None
journals = Journal.objects.all()
issue = None
publications = get_list_or_404(Publication, doi_label=doi_label)
journal = publications[0].get_journal()
elif issue_doi_label:
issue = get_object_or_404(Issue, doi_label=issue_doi_label)
if issue.in_volume:
journal = issue.in_volume.in_journal
else:
journal = issue.in_journal
publications = issue.publications.all()
elif journal_doi_label:
journal = get_object_or_404(Journal, doi_label=journal_doi_label)
publications = Publication.objects.for_journal(journal.name)
else:
# Limit the amount of Publications to still an idiot size
publications = Publication.objects.all()[:50]
# Speeds up operations by reducing the number of queries
if not isinstance(publications, list):
publications = publications.prefetch_related(
'authors', 'funders_generic', 'deposit_set', 'doajdeposit_set')
associate_grant_form = GrantSelectForm()
associate_generic_funder_form = FunderSelectForm()
'issue_doi_label': issue_doi_label,
'publications': publications,
'associate_grant_form': associate_grant_form,
'associate_generic_funder_form': associate_generic_funder_form,
}
return render(request, 'journals/manage_metadata.html', context)
@permission_required('scipost.can_draft_publication', return_403=True)
@transaction.atomic
def add_author(request, doi_label, contributor_id=None, unregistered_author_id=None):
"""
If not all authors are registered Contributors or if they have not
all claimed authorship, this method allows editorial administrators
to associated them to the publication.
This is important for the Crossref metadata, in which all authors must appear.
"""
publication = get_object_or_404(Publication, doi_label=doi_label)
if not publication.is_draft and not request.user.has_perm('can_publish_accepted_submission'):
raise Http404('You do not have permission to edit this non-draft Publication')
if contributor_id:
contributor = get_object_or_404(Contributor, id=contributor_id)
PublicationAuthorsTable.objects.create(contributor=contributor, publication=publication)
publication.save()
messages.success(request, 'Added {} as an author.'.format(contributor))
return redirect(reverse('journals:manage_metadata',
kwargs={'doi_label': publication.doi_label}))
form = UnregisteredAuthorForm(request.POST or request.GET or None)
if request.POST and form.is_valid():
unregistered_author = form.save()
PublicationAuthorsTable.objects.create(
publication=publication,
unregistered_author=unregistered_author)
messages.success(request, 'Added {} as an unregistered author.'.format(
unregistered_author
))
return redirect(reverse('journals:manage_metadata',
kwargs={'doi_label': publication.doi_label}))
elif form.is_valid():
contributors_found = Contributor.objects.filter(
user__last_name__icontains=form.cleaned_data['last_name'])
context = {
'publication': publication,
'contributors_found': contributors_found,
'form': form,
}
return render(request, 'journals/add_author.html', context)
class AuthorAffiliationView(PublicationMixin, PermissionsMixin, DetailView):
"""
Handle the author affiliations for a Publication.
"""
permission_required = 'scipost.can_draft_publication'
template_name = 'journals/author_affiliations.html'
def get_context_data(self, **kwargs):
context = super().get_context_data(**kwargs)
context['add_affiliation_form'] = AuthorsTableOrganizationSelectForm()
return context
# NOT WORKING, using the FBV below instead
# class AddAffiliationView(PermissionsMixin, UpdateView):
# """
# Add an affiliation to a PublicationAuthorsTable instance.
# """
# permission_required = 'scipost.can_draft_publication'
# model = PublicationAuthorsTable
# form_class = AuthorsTableOrganizationSelectForm
# template_name = 'journals/author_affiliations.html'
# def form_valid(self, form):
# self.object.affiliations.add(form.cleaned_data['organization'])
# return super().form_valid(form)
# def get_success_url(self):
# return reverse_lazy('journals:author_affiliations',
# kwargs={'doi_label': self.kwargs['.doi_label']})
@permission_required('scipost.can_draft_publication', return_403=True)
@transaction.atomic
def add_affiliation(request, doi_label, pk):
"""
Adds an affiliation to a PublicationAuthorsTable.
"""
table = get_object_or_404(PublicationAuthorsTable, pk=pk)
form = AuthorsTableOrganizationSelectForm(request.POST or None)
if form.is_valid():
table.affiliations.add(form.cleaned_data['organization'])
table.save()
return redirect(reverse('journals:author_affiliations',
kwargs={'doi_label': doi_label}))
context = {'table': table, 'add_affiliation_form': form}
return render(request, 'journals/author_affiliation_add.html', context)
@permission_required('scipost.can_draft_publication', return_403=True)
@transaction.atomic
def remove_affiliation(request, doi_label, pk, organization_id):
"""
Remove an affiliation in a PublicationAuthorsTable.
"""
table = get_object_or_404(PublicationAuthorsTable, pk=pk)
org = get_object_or_404(Organization, pk=organization_id)
table.affiliations.remove(org)
table.save()
return redirect(reverse('journals:author_affiliations',
kwargs={'doi_label': doi_label}))
@permission_required('scipost.can_draft_publication', return_403=True)
def update_references(request, doi_label):
"""
Update the References for a certain Publication.
"""
publication = get_object_or_404(Publication, doi_label=doi_label)
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