views.py

__copyright__ = "Copyright © Stichting SciPost (SciPost Foundation)"
__license__ = "AGPL v3"


import hashlib
import json
import os
import random
import string
import shutil
import requests

from csp.decorators import csp_update
from plotly.offline import plot
from plotly.graph_objs import Bar

from django.contrib.auth.decorators import login_required
from django.contrib.contenttypes.models import ContentType
from django.core.exceptions import PermissionDenied
from django.core.paginator import Paginator, EmptyPage, PageNotAnInteger
from django.urls import reverse, reverse_lazy
from django.conf import settings
from django.contrib import messages
from django.db import transaction
from django.db.models import Q
from django.http import Http404, HttpResponse
from django.utils import timezone
from django.utils.decorators import method_decorator
from django.utils.html import format_html
from django.views.generic.detail import DetailView
from django.views.generic.edit import CreateView, UpdateView
from django.views.generic.list import ListView
from django.shortcuts import get_object_or_404, get_list_or_404, render, redirect

from dal import autocomplete

from .constants import STATUS_DRAFT, ISSUES_AND_VOLUMES, ISSUES_ONLY, INDIVIDUAL_PUBLICATIONS
from .exceptions import InvalidDOIError
from .models import (
    Journal, Volume, Issue, Publication, Deposit, DOAJDeposit, GenericDOIDeposit,
    PublicationAuthorsTable, OrgPubFraction, PublicationUpdate)
from .forms import (
    AbstractJATSForm, FundingInfoForm, VolumeForm, IssueForm,
    AuthorsTableOrganizationSelectForm, CreateMetadataXMLForm, CitationListBibitemsForm,
    ReferenceFormSet, CreateMetadataDOAJForm, DraftPublicationForm, PublicationGrantsForm,
    DraftPublicationApprovalForm, PublicationPublishForm, PublicationAuthorOrderingFormSet,
    OrgPubFractionsFormSet)
from .mixins import PublicationMixin, ProdSupervisorPublicationPermissionMixin
from .services import update_citedby
from .utils import JournalUtils

from comments.models import Comment
from funders.forms import FunderSelectForm, GrantSelectForm
from funders.models import Grant
from mails.views import MailEditorSubview
from ontology.models import AcademicField, Topic
from ontology.forms import SelectTopicForm
from organizations.models import Organization
from profiles.forms import ProfileSelectForm
from submissions.constants import STATUS_PUBLISHED
from submissions.models import Submission, Report
from scipost.forms import ConfirmationForm
from scipost.models import Contributor
from scipost.mixins import PermissionsMixin, RequestViewMixin, PaginationMixin

from guardian.decorators import permission_required


################
# Autocomplete #
################

class PublicationAutocompleteView(autocomplete.Select2QuerySetView):
    """
    View to feed the Select2 widget.
    """
    def get_queryset(self):
        qs = Publication.objects.published()
        if self.q:
            qs = qs.filter(Q(title__icontains=self.q) |
                           Q(doi_label__icontains=self.q) |
                           Q(author_list__icontains=self.q))
        return qs.order_by('-publication_date')

    def get_result_label(self, item):
        return format_html(
            '<strong>{}</strong><br>{}<br><span class="text-muted">by {}</span>',
            item.doi_label, item.title, item.author_list)


################
# DOI dispatch #
################

def doi_dispatch(request, journal_tag, part_1=None, part_2=None, part_3=None):
    """
    Dispatch given DOI route to the appropriate view according to the Journal's settings.

    journal_tag -- Part of the DOI right before the first period.

    * part_1 (optional) -- Part of the DOI after the first period.
    * part_2 (optional) -- Part of the DOI after the second period.
    * part_3 (optional) -- Part of the DOI after the third period.
    """
    journal = get_object_or_404(Journal, doi_label=journal_tag)
    if part_1 is None:
        # This DOI refers to a Journal landing page.
        return landing_page(request, journal_tag)
    elif part_2 is None:
        doi_label = '{0}.{1}'.format(journal_tag, part_1)

        if journal.structure == INDIVIDUAL_PUBLICATIONS:
            # Publication DOI for invidivual publication Journals.
            return publication_detail(request, doi_label)
        elif journal.structure == ISSUES_ONLY:
            # Issue DOI for Issue only Journals.
            return issue_detail(request, doi_label)

        # The third option: a `Issue and Volume Journal DOI` would lead to a "volume detail page",
        # but that does not exist. Redirect to the Journal landing page instead.
        return landing_page(request, journal_tag)
    elif part_3 is None:
        doi_label = '{0}.{1}.{2}'.format(journal_tag, part_1, part_2)

        if journal.structure == ISSUES_AND_VOLUMES:
            # Issue DOI for Issue+Volumes Journals.
            return issue_detail(request, doi_label)
        elif journal.structure == ISSUES_ONLY:
            # Publication DOI for Issue only Journals.
            return publication_detail(request, doi_label)
    else:
        doi_label = '{0}.{1}.{2}.{3}'.format(journal_tag, part_1, part_2, part_3)
        return publication_detail(request, doi_label)

    # Invalid db configure
    raise InvalidDOIError({
        'journal_tag': journal_tag,
        'part_1': part_1,
        'part_2': part_2,
        'part_3': part_3})


############
# Journals
############

class JournalListView(ListView):
    model = Journal

    def get_queryset(self):
        qs = super().get_queryset()
        # for url /journals/?field=[acad_field_slug]
        if self.request.GET.get('field'):
            qs = qs.filter(college__acad_field__slug=self.request.GET.get('field'))
        # for url /journals/[acad_field_slug]
        if 'acad_field' in self.kwargs:
            qs = qs.filter(college__acad_field=self.kwargs['acad_field'])
        return qs

    def get_context_data(self, *args, **kwargs):
        context = super().get_context_data(*args, **kwargs)
        # for url /journals/?field=[acad_field_slug]
        if self.request.GET.get('field'):
            context['acad_field'] = get_object_or_404(
                AcademicField, slug=self.request.GET.get('field'))
        # for url /journals/[acad_field_slug]
        if 'acad_field' in self.kwargs:
            context['acad_field'] = self.kwargs['acad_field']
        return context


class PublicationListView(PaginationMixin, ListView):
    """
    Show Publications filtered per specialty.
    """
    queryset = Publication.objects.published()
    paginate_by = 10

    def get_queryset(self):
        qs = super().get_queryset()
        if self.request.GET.get('journal'):
            qs = qs.for_journal(self.request.GET['journal'])

        if self.request.GET.get('issue'):
            try:
                issue = int(self.request.GET['issue'])
            except ValueError:
                issue = None
            if issue:
                qs = qs.filter(in_issue__id=issue)
        if self.request.GET.get('specialty'):
            qs = qs.for_specialty(self.request.GET['specialty'])

        if self.request.GET.get('orderby') == 'citations':
            qs = qs.order_by('-number_of_citations')
        else:
            qs = qs.order_by('-publication_date', '-paper_nr')
        return qs

    def get_context_data(self, **kwargs):